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  5. Solyc02g021270.3.1

Solyc02g021270.3.1 (Solyc02g021270)


Aliases : Solyc02g021270

Description : Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana (sp|p0c894|pp143_arath : 773.0)


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g021270.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00111980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g09820... 0.04 OrthoFinder output from all 47 species
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.08 OrthoFinder output from all 47 species
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.06 OrthoFinder output from all 47 species
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.03 OrthoFinder output from all 47 species
AMTR_s00106p00105070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.12 OrthoFinder output from all 47 species
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.12 OrthoFinder output from all 47 species
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.04 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
GSVIVT01029769001 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 OrthoFinder output from all 47 species
GSVIVT01031237001 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.03 OrthoFinder output from all 47 species
GSVIVT01037263001 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.04 OrthoFinder output from all 47 species
Gb_01582 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.06 OrthoFinder output from all 47 species
Gb_03162 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 OrthoFinder output from all 47 species
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.08 OrthoFinder output from all 47 species
Gb_08861 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.05 OrthoFinder output from all 47 species
Gb_12831 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.03 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.09 OrthoFinder output from all 47 species
Gb_15596 PGR3 Pentatricopeptide repeat-containing protein At5g39710... 0.03 OrthoFinder output from all 47 species
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.09 OrthoFinder output from all 47 species
Gb_23453 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_26765 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.05 OrthoFinder output from all 47 species
Gb_29383 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_30066 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.03 OrthoFinder output from all 47 species
Gb_30544 No alias Pentatricopeptide repeat-containing protein At2g32630... 0.05 OrthoFinder output from all 47 species
Gb_41674 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.06 OrthoFinder output from all 47 species
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.06 OrthoFinder output from all 47 species
LOC_Os04g38930.1 LOC_Os04g38930 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os05g19390.1 LOC_Os05g19390 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os06g36910.1 LOC_Os06g36910 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 OrthoFinder output from all 47 species
MA_299481g0010 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.02 OrthoFinder output from all 47 species
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.06 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.06 OrthoFinder output from all 47 species
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.05 OrthoFinder output from all 47 species
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.02 OrthoFinder output from all 47 species
Zm00001e007886_P001 Zm00001e007886 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 226 255
IPR002885 Pentatricopeptide_repeat 646 674
IPR002885 Pentatricopeptide_repeat 540 570
IPR002885 Pentatricopeptide_repeat 193 219
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 257 303
IPR002885 Pentatricopeptide_repeat 678 723
IPR002885 Pentatricopeptide_repeat 398 446
IPR002885 Pentatricopeptide_repeat 572 621
IPR002885 Pentatricopeptide_repeat 327 376
No external refs found!