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  5. Solyc02g014770.3.1

Solyc02g014770.3.1 (CHA19, CHR19, ETL1,...)


Aliases : CHA19, CHR19, ETL1, Solyc02g014770

Description : chromatin remodeling factor (Etl1)


Gene families : OG0005169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005169_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g014770.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Als_g63137 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08541 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.32G067600.1 CHA19, CHR19,... ATPase component *(Etl1) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g11215 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01904 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05005 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_18893 CHA19, CHR19, ETL1 chromatin remodeling factor (Etl1) 0.06 OrthoFinder output from all 47 species
Len_g03887 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02212 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14501 CHA19, CHR19, ETL1 ATPase component *(Etl1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26219 No alias ATPase component *(Etl1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 566 678
IPR000330 SNF2_N 209 497
No external refs found!