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  5. Solyc02g014310.4.1

Solyc02g014310.4.1 (PARL1, ATNUC-L1,...)


Aliases : PARL1, ATNUC-L1, NUC-L1, Solyc02g014310

Description : rDNA chromatin transcription factor (NCL)


Gene families : OG0001950 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001950_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g014310.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00090110 PARL1, ATNUC-L1,... RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.1 OrthoFinder output from all 47 species
AT1G48920 PARL1, ATNUC-L1, NUC-L1 nucleolin like 1 0.18 OrthoFinder output from all 47 species
Aev_g13012 PARLL1, NUC-L2, ATNUC-L2 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Aev_g38951 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Als_g63112 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Aop_g12627 PARLL1, NUC-L2, ATNUC-L2 regulatory protein *(NCL) of rRNA transcription &... 0.08 OrthoFinder output from all 47 species
Aop_g39120 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene70283.t2 PARL1, ATNUC-L1,... regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Cba_g09213 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Ceric.05G016700.1 PARLL1, NUC-L2,... regulatory protein *(NCL) of rRNA transcription &... 0.07 OrthoFinder output from all 47 species
Ceric.13G070500.1 PARLL1, NUC-L2,... regulatory protein *(NCL) of rRNA transcription &... 0.06 OrthoFinder output from all 47 species
Ceric.15G060200.1 PARL1, ATNUC-L1,... regulatory protein *(NCL) of rRNA transcription &... 0.07 OrthoFinder output from all 47 species
Cre06.g275100 PARLL1, NUC-L2, ATNUC-L2 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.15 OrthoFinder output from all 47 species
Dac_g08175 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.09 OrthoFinder output from all 47 species
Dac_g45859 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.05 OrthoFinder output from all 47 species
Dcu_g32133 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Dcu_g42966 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.05 OrthoFinder output from all 47 species
Ehy_g13607 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.04 OrthoFinder output from all 47 species
GSVIVT01012042001 PARLL1, NUC-L2, ATNUC-L2 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.13 OrthoFinder output from all 47 species
Gb_32672 PARL1, ATNUC-L1, NUC-L1 rDNA chromatin transcription factor (NCL) 0.06 OrthoFinder output from all 47 species
LOC_Os04g52960.1 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.1 OrthoFinder output from all 47 species
LOC_Os08g09350.1 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.13 OrthoFinder output from all 47 species
Len_g19210 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.05 OrthoFinder output from all 47 species
Len_g47362 PARLL1, NUC-L2, ATNUC-L2 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Lfl_g36622 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
MA_10433238g0010 PARL1, ATNUC-L1, NUC-L1 rDNA chromatin transcription factor (NCL) 0.06 OrthoFinder output from all 47 species
MA_11380g0030 PARLL1, NUC-L2, ATNUC-L2 rDNA chromatin transcription factor (NCL) 0.04 OrthoFinder output from all 47 species
Nbi_g25668 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.06 OrthoFinder output from all 47 species
Ore_g15393 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.06 OrthoFinder output from all 47 species
Ppi_g31125 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Sam_g15345 No alias regulatory protein *(NCL) of rRNA transcription &... 0.05 OrthoFinder output from all 47 species
Smo234317 PARL1, ATNUC-L1, NUC-L1 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.07 OrthoFinder output from all 47 species
Spa_g26094 PARLL1, NUC-L2, ATNUC-L2 regulatory protein *(NCL) of rRNA transcription &... 0.02 OrthoFinder output from all 47 species
Tin_g09738 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.05 OrthoFinder output from all 47 species
Zm00001e004617_P003 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.09 OrthoFinder output from all 47 species
Zm00001e021609_P004 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 483 540
IPR000504 RRM_dom 369 436
No external refs found!