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  5. Solyc01g111870.3.1

Solyc01g111870.3.1 (ATR, ATRAD3, ATATR,...)


Aliases : ATR, ATRAD3, ATATR, Solyc01g111870

Description : DNA single-strand break response kinase (ATR). protein kinase (PIKK)


Gene families : OG0005221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g111870.3.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00163820 ATR, ATRAD3,... Protein modification.phosphorylation.atypical kinase... 0.07 OrthoFinder output from all 47 species
Azfi_s0463.g072347 ATR, ATRAD3, ATATR kinase component *(ATR) of ATR-ATRIP DNA damage sensor... 0.03 OrthoFinder output from all 47 species
Ceric.38G065100.1 ATR, ATRAD3,... kinase component *(ATR) of ATR-ATRIP DNA damage sensor... 0.02 OrthoFinder output from all 47 species
Gb_37326 ATR, ATRAD3, ATATR DNA single-strand break response kinase (ATR). protein... 0.04 OrthoFinder output from all 47 species
Sam_g01032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17462 No alias kinase component *(ATR) of ATR-ATRIP DNA damage sensor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030915 Smc5-Smc6 complex IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0106068 SUMO ligase complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR012993 UME 1106 1206
IPR003151 PIK-rel_kinase_FAT 1808 2185
IPR000403 PI3/4_kinase_cat_dom 2412 2657
IPR003152 FATC_dom 2697 2728
No external refs found!