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  5. Solyc01g111590.4.1

Solyc01g111590.4.1 (MSI2, NFC2, NFC02,...)


Aliases : MSI2, NFC2, NFC02, MSI02, Solyc01g111590

Description : component CAF1c/MSI of CAF1 histone chaperone complex


Gene families : OG0001615 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001615_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g111590.4.1

Target Alias Description ECC score Gene Family Method Actions
AT2G16780 MSI2, NFC2, NFC02, MSI02 Transducin family protein / WD-40 repeat family protein 0.11 OrthoFinder output from all 47 species
AT4G35050 NFC3, MSI3 Transducin family protein / WD-40 repeat family protein 0.05 OrthoFinder output from all 47 species
AT5G58230 MSI1, MEE70, ATMSI1 Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aob_g05086 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Aop_g05698 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.08 OrthoFinder output from all 47 species
Ceric.19G012200.1 MSI1, MEE70,... component *(MSI1) of PRC2 histone methylation complex &... 0.07 OrthoFinder output from all 47 species
Cre12.g523200 MSI1, MEE70, ATMSI1 Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
Dac_g08708 MSI1, MEE70, ATMSI1 component *(CAF1c/MSI) of CAF1 histone chaperone complex... 0.1 OrthoFinder output from all 47 species
Dac_g38232 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.1 OrthoFinder output from all 47 species
LOC_Os09g36900.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.1 OrthoFinder output from all 47 species
Len_g05275 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.04 OrthoFinder output from all 47 species
Lfl_g07946 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
MA_10432677g0010 MSI1, MEE70, ATMSI1 Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
MA_10434820g0010 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
Nbi_g09174 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011535 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Sam_g11292 No alias component *(MSI1) of PRC2 histone methylation complex &... 0.06 OrthoFinder output from all 47 species
Smo233646 MSI1, MEE70, ATMSI1 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Tin_g09251 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.14 OrthoFinder output from all 47 species
Zm00001e035979_P001 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 293 331
IPR001680 WD40_repeat 209 244
IPR001680 WD40_repeat 352 387
IPR022052 Histone-bd_RBBP4_N 18 86
No external refs found!