Solyc01g110550.3.1 (Solyc01g110550)

Aliases : Solyc01g110550

Description : Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana (sp|o65693|rbfa_arath : 225.0)

Gene families : OG0006622 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006622_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g110550.3.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AT4G34730	No alias	ribosome-binding factor A family protein	0.02	OrthoFinder output from all 47 species
Ala_g12131	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07697	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene56309.t1	Aspi01Gene56309	16S-rRNA maturation factor *(RBF1) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g07524	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g16747	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01024154001	No alias	Probable ribosome-binding factor A, chloroplastic...	0.02	OrthoFinder output from all 47 species
MA_10435864g0010	No alias	Probable ribosome-binding factor A, chloroplastic...	0.07	OrthoFinder output from all 47 species
MA_191090g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Ore_g08106	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g09391	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15385	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25386	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000238	RbfA	64	181

External Links

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Solyc01g110550.3.1 (Solyc01g110550)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation