1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g110090.1.1

Solyc01g110090.1.1 (Solyc01g110090)


Aliases : Solyc01g110090

Description : no hits & (original description: none)


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g110090.1.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00118770 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G45460 No alias IBR domain containing protein 0.05 OrthoFinder output from all 47 species
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.05 OrthoFinder output from all 47 species
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.03 OrthoFinder output from all 47 species
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.05 OrthoFinder output from all 47 species
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.04 OrthoFinder output from all 47 species
Aspi01Gene45156.t1 Aspi01Gene45156 plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01016056001 No alias Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_32390 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 OrthoFinder output from all 47 species
LOC_Os09g26470.1 LOC_Os09g26470 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 148 198
IPR002867 IBR_dom 85 131
No external refs found!