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  5. Solyc01g109520.3.1

Solyc01g109520.3.1 (ATRAB7B, RAB7B,...)


Aliases : ATRAB7B, RAB7B, ATRABG3F, RAB71, RABG3F, Solyc01g109520

Description : G-class RAB GTPase


Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g109520.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072050 AtRABG3d,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
AT4G09720 ATRABG3A, RABG3A RAB GTPase homolog G3A 0.02 OrthoFinder output from all 47 species
Adi_g021268 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115862 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25454.t1 AtRABG3d,... G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63973.t1 AtRABG3d,... G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43029 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G059700.1 ATRABG3C,... G-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.20G031900.1 ATRAB7B, RAB7B,... G-class RAB GTPase & original description:... 0.04 OrthoFinder output from all 47 species
Cre06.g311900 ATRAB7, RABG3E, ATRABG3E Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Dac_g04092 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01198 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07308 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g12730.1 AtRABG3d,... G-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Lfl_g08054 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g13820.1 AtRABG3d, RABG3d G-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Sam_g07442 No alias G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12567 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53072 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04335 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 177
No external refs found!