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  5. Solyc01g109350.3.1

Solyc01g109350.3.1 (Solyc01g109350)


Aliases : Solyc01g109350

Description : ubiquitin-binding adaptor (UFD3)


Gene families : OG0004990 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004990_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc01g109350.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00150840 evm_27.TU.AmTr_v1... COMPASS-like H3K4 histone methylase component WDR5A... 0.03 OrthoFinder output from all 47 species
Adi_g013678 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02313 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01051 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G024400.1 Ceric.31G024400 ubiquitin-binding adaptor *(UFD3) & original... 0.02 OrthoFinder output from all 47 species
Cre09.g389912 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
GSVIVT01031913001 No alias Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder output from all 47 species
LOC_Os07g03160.1 LOC_Os07g03160 ubiquitin-binding adaptor (UFD3) 0.02 OrthoFinder output from all 47 species
Mp8g18780.1 No alias ubiquitin-binding adaptor (UFD3) 0.03 OrthoFinder output from all 47 species
Msp_g36601 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g44526 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR015155 PFU 339 448
IPR001680 WD40_repeat 13 45
IPR001680 WD40_repeat 139 176
IPR001680 WD40_repeat 180 214
IPR001680 WD40_repeat 258 292
IPR001680 WD40_repeat 219 255
IPR013535 PUL_dom 485 747
No external refs found!