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  5. Solyc01g107870.3.1

Solyc01g107870.3.1 (PAB8, PABP8, Solyc01g107870)


Aliases : PAB8, PABP8, Solyc01g107870

Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc01g107870.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g023675 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Als_g13165 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Aop_g05955 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene18547.t1 PAB8, PABP8,... mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0060.g034731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Cba_g10012 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Ceric.29G016700.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Ceric.34G008600.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021244.19 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.02 OrthoFinder output from all 47 species
Dac_g06601 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Len_g50808 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
MA_36585g0020 PAB7 mRNA poly-A-tail binding factor (PABP) 0.01 OrthoFinder output from all 47 species
Mp7g18970.1 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Msp_g11465 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Pir_g19320 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Pir_g54838 PAB2, PABP2, ATPAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023696 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Spa_g41229 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e009430_P002 PAB2, PABP2,... mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Zm00001e033592_P004 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 111 179
IPR000504 RRM_dom 305 373
IPR000504 RRM_dom 202 270
IPR000504 RRM_dom 23 93
IPR002004 PABP_HYD 551 617
No external refs found!