Solyc01g103440.3.1 (Solyc01g103440)


Aliases : Solyc01g103440

Description : glycinamide RN synthetase (GARS)


Gene families : OG0006262 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006262_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g103440.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00221260 evm_27.TU.AmTr_v1... Nucleotide metabolism.purines.ribonucleotide (RN)... 0.02 OrthoFinder output from all 47 species
AT1G09830 No alias Glycinamide ribonucleotide (GAR) synthetase 0.03 OrthoFinder output from all 47 species
Ceric.14G035500.1 Ceric.14G035500 EC_6.3 ligase forming carbon-nitrogen bond & original... 0.03 OrthoFinder output from all 47 species
LOC_Os08g09210.2 LOC_Os08g09210 glycinamide RN synthetase (GARS) 0.06 OrthoFinder output from all 47 species
Len_g23088 No alias EC_6.3 ligase forming carbon-nitrogen bond & original... 0.03 OrthoFinder output from all 47 species
Mp4g18670.1 No alias glycinamide RN synthetase (GARS) 0.03 OrthoFinder output from all 47 species
Tin_g01099 No alias EC_6.3 ligase forming carbon-nitrogen bond & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEA Interproscan
BP GO:0009113 purine nucleobase biosynthetic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004797 thymidine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR020562 PRibGlycinamide_synth_N 83 183
IPR020561 PRibGlycinamid_synth_ATP-grasp 184 378
IPR020560 PRibGlycinamide_synth_C-dom 413 506
No external refs found!