Aliases : GRP23, Solyc01g103160
Description : Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana (sp|q9sy69|ppr29_arath : 468.0)
Gene families : OG0010708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010708_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc01g103160.3.1 | |
Cluster | HCCA: Cluster_19 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00021p00236970 | emb1796,... | Pentatricopeptide repeat-containing protein At3g49240,... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00099p00081960 | GRP23,... | Pentatricopeptide repeat-containing protein At1g10270... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01023159001 | GRP23 | Pentatricopeptide repeat-containing protein At1g10270... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os05g30240.1 | GRP23, LOC_Os05g30240 | Pentatricopeptide repeat-containing protein At1g10270... | 0.09 | OrthoFinder output from all 47 species | |
MA_118904g0010 | emb1796 | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g083280.4.1 | emb1796, Solyc03g083280 | Pentatricopeptide repeat-containing protein At3g49240,... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e020614_P001 | emb1796, Zm00001e020614 | Pentatricopeptide repeat-containing protein At3g49240,... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |