Aliases : NOP56, Solyc01g100570
Description : snoRNP scaffold component Nop56 of snoRNP rRNA methylation complex
Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc01g100570.4.1 | |
Cluster | HCCA: Cluster_19 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00005p00226680 | NOP56,... | RNA processing.RNA modification.rRNA/tRNA... | 0.06 | OrthoFinder output from all 47 species | |
AT1G56110 | NOP56 | homolog of nucleolar protein NOP56 | 0.15 | OrthoFinder output from all 47 species | |
AT3G12860 | No alias | NOP56-like pre RNA processing ribonucleoprotein | 0.07 | OrthoFinder output from all 47 species | |
Aev_g27089 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g12050 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g11428 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.05 | OrthoFinder output from all 47 species | |
Aspi01Gene21355.t1 | NOP56, Aspi01Gene21355 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene34301.t1 | NOP56, Aspi01Gene34301 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g77651 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001073.20 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | OrthoFinder output from all 47 species | |
Cre12.g525200 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.12 | OrthoFinder output from all 47 species | |
Ehy_g06884 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01008506001 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.11 | OrthoFinder output from all 47 species | |
Gb_05243 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.15 | OrthoFinder output from all 47 species | |
LOC_Os03g22880.1 | NOP56, LOC_Os03g22880 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.06 | OrthoFinder output from all 47 species | |
Lfl_g03084 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species | |
MA_10395559g0010 | No alias | Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
MA_10434077g0010 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.09 | OrthoFinder output from all 47 species | |
MA_9961528g0010 | NOP56 | Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... | 0.07 | OrthoFinder output from all 47 species | |
Mp2g23840.1 | NOP56 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.17 | OrthoFinder output from all 47 species | |
Ore_g37588 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.05 | OrthoFinder output from all 47 species | |
Pp3c16_5220V3.1 | NOP56, Pp3c16_5220 | homolog of nucleolar protein NOP56 | 0.02 | OrthoFinder output from all 47 species | |
Sam_g10672 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.05 | OrthoFinder output from all 47 species | |
Smo167367 | NOP56 | RNA processing.RNA modification.rRNA/tRNA... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g48006 | NOP56 | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g03400 | No alias | scaffold component *(Nop56) of snoRNP rRNA methylation... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e001676_P001 | NOP56, Zm00001e001676 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e038196_P002 | NOP56, Zm00001e038196 | snoRNP scaffold component Nop56 of snoRNP rRNA... | 0.07 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
CC | GO:0019867 | outer membrane | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
CC | GO:0031966 | mitochondrial membrane | IEP | HCCA |
CC | GO:0031968 | organelle outer membrane | IEP | HCCA |
CC | GO:0034457 | Mpp10 complex | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |