1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g100130.3.1

Solyc01g100130.3.1 (Solyc01g100130)


Aliases : Solyc01g100130

Description : no hits & (original description: none)


Gene families : OG0003373 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003373_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g100130.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT3G05670 No alias RING/U-box protein 0.08 OrthoFinder output from all 47 species
Azfi_s0117.g046586 No alias not classified & original description: CDS=1-2244 0.03 OrthoFinder output from all 47 species
Sam_g50603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 541 584
IPR019787 Znf_PHD-finger 635 680
No external refs found!