Solyc01g099960.4.1 (Solyc01g099960)

Aliases : Solyc01g099960

Description : pectin methylesterase

Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g099960.4.1
Cluster	HCCA: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00230630	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AMTR_s00003p00120050	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
AMTR_s00003p00238240	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AMTR_s00007p00101250	ATPMEPCRA,...	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
AMTR_s00038p00046180	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
AMTR_s00129p00028250	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
AMTR_s00129p00031200	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
AT1G02810	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
AT2G43050	ATPMEPCRD	Plant invertase/pectin methylesterase inhibitor superfamily	0.05	OrthoFinder output from all 47 species
AT2G45220	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
AT3G43270	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	OrthoFinder output from all 47 species
AT4G33220	PME44, ATPME44	pectin methylesterase 44	0.04	OrthoFinder output from all 47 species
AT5G09760	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
AT5G51500	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
Ala_g26378	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15045	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aob_g23889	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Aop_g07772	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Aop_g61344	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene07382.t1	Aspi01Gene07382	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene11209.t1	Aspi01Gene11209	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene36660.t1	ATPMEPCRF,...	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0113.g045942	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0205.g057775	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.19G055200.1	Ceric.19G055200	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.19G055900.1	Ceric.19G055900	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.19G056100.1	ATPMEPCRF,...	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Dac_g15947	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dcu_g11844	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g02809	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g03889	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g09100	ATPME3, PME3	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g09868	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g10683	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01028040001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
GSVIVT01028264001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01028265001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01031165001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
Gb_18512	ATPME3, PME3	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Gb_28387	ATPME3, PME3	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os01g21034.1	ATPME3, PME3,...	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os03g18860.1	LOC_Os03g18860	pectin methylesterase	0.02	OrthoFinder output from all 47 species
LOC_Os08g34910.1	LOC_Os08g34910	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os09g26360.1	LOC_Os09g26360	pectin methylesterase	0.02	OrthoFinder output from all 47 species
LOC_Os11g08750.1	LOC_Os11g08750	pectin methylesterase	0.04	OrthoFinder output from all 47 species
MA_10434624g0010	ATPME2, PME2	Pectinesterase/pectinesterase inhibitor U1 OS=Solanum...	0.04	OrthoFinder output from all 47 species
MA_10434624g0020	ATPME2, PME2	pectin methylesterase	0.04	OrthoFinder output from all 47 species
MA_8928694g0010	No alias	Probable pectinesterase/pectinesterase inhibitor 32...	0.02	OrthoFinder output from all 47 species
Msp_g01650	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Nbi_g01365	PME44, ATPME44	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Nbi_g13298	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Pir_g07009	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ppi_g16155	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ppi_g31109	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000947	No alias	not classified & original description: CDS=1-831	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021277	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Solyc02g080220.3.1	ATPMEPCRA,...	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Tin_g13216	No alias	EC_3.1 hydrolase acTing on ester bond & original...	0.03	OrthoFinder output from all 47 species
Tin_g28885	ATPME2, PME2	EC_3.1 hydrolase acTing on ester bond & original...	0.02	OrthoFinder output from all 47 species
Zm00001e011069_P001	PME61, Zm00001e011069	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Zm00001e022184_P001	PME44, ATPME44,...	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Zm00001e026790_P001	ATPMEPCRB, Zm00001e026790	pectin methylesterase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0140678	molecular function inhibitor activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006820	monoatomic anion transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006501	Pectinesterase_inhib_dom	43	191
IPR000070	Pectinesterase_cat	238	525

External Links

No external refs found!

Solyc01g099960.4.1 (Solyc01g099960)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation