1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g097450.3.1

Solyc01g097450.3.1 (Solyc01g097450)


Aliases : Solyc01g097450

Description : PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana (sp|q9sqz9|pith1_arath : 289.0)


Gene families : OG0005454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005454_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g097450.3.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271130 evm_27.TU.AmTr_v1... PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g021260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g34517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.33G013600.1 Ceric.33G013600 not classified & original description: pacid=50607246... 0.04 OrthoFinder output from all 47 species
LOC_Os03g58130.1 LOC_Os03g58130 PITH domain-containing protein At3g04780 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g11568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010735 No alias not classified & original description: CDS=73-600 0.03 OrthoFinder output from all 47 species
Spa_g09307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00333 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR010400 PITH_dom 16 159
No external refs found!