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  5. Solyc01g095890.4.1

Solyc01g095890.4.1 (ATX4, SDG16, Solyc01g095890)


Aliases : ATX4, SDG16, Solyc01g095890

Description : class III/Trithorax histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0000660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g095890.4.1

Target Alias Description ECC score Gene Family Method Actions
AT5G53430 SET29, SDG29, ATX5 SET domain group 29 0.02 OrthoFinder output from all 47 species
Adi_g018544 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ala_g11532 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Als_g30869 ATX3, SDG14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13069.t1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene65361.t1 SDG25, ATXR7,... class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Ceric.01G107400.1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Ceric.20G091500.1 Ceric.20G091500 not classified & original description: pacid=50567530... 0.03 OrthoFinder output from all 47 species
Cre09.g395584 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g07171 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g08323 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g09379 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01027118001 ATX4, SDG16 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Gb_04139 SDG25, ATXR7 class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
LOC_Os12g41900.1 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.02 OrthoFinder output from all 47 species
MA_14080g0020 ATX3, SDG14 Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp1g17790.1 SDG25, ATXR7 class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
Mp4g21720.1 ATX4, SDG16 class III/Trithorax histone methyltransferase component... 0.04 OrthoFinder output from all 47 species
Pir_g41040 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Spa_g47178 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e039307_P005 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 917 1022
IPR000313 PWWP_dom 241 339
IPR019787 Znf_PHD-finger 430 482
No external refs found!