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  5. Solyc01g095650.4.1

Solyc01g095650.4.1 (HTR12, CENH3, Solyc01g095650)


Aliases : HTR12, CENH3, Solyc01g095650

Description : histone H3 variant (CENH3)


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g095650.4.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT3G27360 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G10390 No alias Histone superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G65360 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g08007 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g26587 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36137 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G049100.1 Ceric.22G049100 histone H3 variant *(CENH3) & original description:... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000970.26 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre16.g661450 No alias Cell cycle.mitosis and meiosis.chromosome... 0.01 OrthoFinder output from all 47 species
Dac_g12416 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.04 OrthoFinder output from all 47 species
Gb_28519 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
LOC_Os01g64640.1 LOC_Os01g64640 histone (H3) 0.05 OrthoFinder output from all 47 species
LOC_Os05g36280.1 LOC_Os05g36280 histone (H3) 0.06 OrthoFinder output from all 47 species
LOC_Os05g41080.1 LOC_Os05g41080 histone H3 variant (CENH3) 0.02 OrthoFinder output from all 47 species
LOC_Os06g06510.1 LOC_Os06g06510 histone (H3) 0.16 OrthoFinder output from all 47 species
MA_197719g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g10730.1 No alias histone (H3) 0.05 OrthoFinder output from all 47 species
Mp7g16200.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g18030.1 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
Msp_g00861 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33278 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g36081 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41988 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09484 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g20165 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22036 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.05 OrthoFinder output from all 47 species
Solyc02g077480.1.1 Solyc02g077480 histone (H3) 0.03 OrthoFinder output from all 47 species
Spa_g04339 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g42522 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56118 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03087 No alias histone *(H3) & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g04242 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04797 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09717 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43939 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008160_P001 Zm00001e008160 histone (H3) 0.06 OrthoFinder output from all 47 species
Zm00001e016861_P001 Zm00001e016861 histone (H3) 0.04 OrthoFinder output from all 47 species
Zm00001e018263_P001 Zm00001e018263 histone (H3) 0.03 OrthoFinder output from all 47 species
Zm00001e019170_P001 Zm00001e019170 histone (H3) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 137
No external refs found!