- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Solyc01g095180
Description : RING-H2-class E3 ligase
Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc01g095180.2.1 | |
| Cluster | HCCA: Cluster_147 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00059p00176670 | evm_27.TU.AmTr_v1... | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00077p00074350 | evm_27.TU.AmTr_v1... | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G53820 | No alias | RING/U-box superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT1G63840 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G19140 | DNF | RING/U-box superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| AT4G09100 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G41440 | No alias | RING/U-box superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g076180 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g104170 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g01255 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g03304 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g12179 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g13178 | ATL2, TL2 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g10457 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g03725 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g10161 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g17608 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.08 | OrthoFinder output from all 47 species | |
| Als_g52149 | ATL5 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g32159 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g12685 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g13275 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene23680.t1 | Aspi01Gene23680 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene36586.t1 | Aspi01Gene36586 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene48333.t1 | RHA3A, Aspi01Gene48333 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene61881.t1 | RHA2B, Aspi01Gene61881 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0385.g067521 | RHA3B | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.03G066200.1 | Ceric.03G066200 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.22G061400.1 | ATL2, TL2,... | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g02946 | MEE16 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g08522 | BRH1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g41558 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g05771 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g06688 | MEE16 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g25748 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01009096001 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01027769001 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_04301 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_15836 | No alias | RING-H2-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g53500.1 | LOC_Os01g53500 | RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g55110.1 | LOC_Os01g55110 | RING-H2-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g45780.1 | LOC_Os02g45780 | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os02g46100.1 | LOC_Os02g46100 | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g28080.1 | ATL3, LOC_Os03g28080 | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g09310.1 | LOC_Os06g09310 | RING-H2-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os08g38460.1 | XERICO, LOC_Os08g38460 | ubiquitin protein ligase (XERICO) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g30310.1 | LOC_Os10g30310 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g12736 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g34104 | ATL2, TL2 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g33308 | ATL2, TL2 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| MA_125507g0010 | No alias | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| MA_17390g0010 | No alias | RING-H2-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| MA_9764263g0010 | No alias | RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... | 0.07 | OrthoFinder output from all 47 species | |
| Mp5g08270.1 | No alias | RING-H2-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g05053 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g19208 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g06948 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g17145 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g17146 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g18004 | ATL5 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g32953 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g39132 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g40735 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g43979 | ATL6 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g41691 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g01184 | BRH1 | E3 ubiquitin ligase *(BRH) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g02769 | BRH1 | E3 ubiquitin ligase *(BRH) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g03091 | BRH1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29296 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g33048 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0138.g022556 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0149.g023284 | No alias | not classified & original description: CDS=1-567 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g01312 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g31319 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g52337 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g081040.4.1 | Solyc01g081040 | RING-H2-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| Solyc02g067700.1.1 | ATL3, Solyc02g067700 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g30280 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g51618 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g01893 | No alias | RING-H2-class ATL-subclass E3 ubiquiTin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09773 | No alias | RING-H2-class ATL-subclass E3 ubiquiTin ligase &... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g38097 | No alias | RING-H2-class ATL-subclass E3 ubiquiTin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e002233_P001 | Zm00001e002233 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e007957_P001 | ATL6, Zm00001e007957 | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e015449_P001 | Zm00001e015449 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e022175_P001 | Zm00001e022175 | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023832_P001 | ATL31, CNI1,... | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e029086_P001 | Zm00001e029086 | RING-H2-class E3 ligase | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 189 | 231 |
| No external refs found! |