1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g094540.4.1

Solyc01g094540.4.1 (smB, Solyc01g094540)


Aliases : smB, Solyc01g094540

Description : component Sm-B of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0007641 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007641_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g094540.4.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00109230 smB,... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
AT4G20440 smB small nuclear ribonucleoprotein associated protein B 0.09 OrthoFinder output from all 47 species
Ceric.03G034300.1 smB, Ceric.03G034300 component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Cre14.g611150 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Dcu_g49337 smB component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
LOC_Os07g07220.1 smB, LOC_Os07g07220 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
MA_10426235g0010 smB component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
Zm00001e011476_P001 Zm00001e011476 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Zm00001e032884_P001 Zm00001e032884 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 81
No external refs found!