Solyc01g091450.3.1 (Solyc01g091450)

Aliases : Solyc01g091450

Description : Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana (sp|q9lpc4|ppr1_arath : 378.0)

Gene families : OG0005460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005460_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g091450.3.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00026400	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g01970...	0.05	OrthoFinder output from all 47 species
AT1G01970	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.07	OrthoFinder output from all 47 species
AT1G19520	NFD5	pentatricopeptide (PPR) repeat-containing protein	0.04	OrthoFinder output from all 47 species
GSVIVT01009725001	NFD5	Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial...	0.03	OrthoFinder output from all 47 species
Mp4g06140.1	No alias	Pentatricopeptide repeat-containing protein At1g01970...	0.15	OrthoFinder output from all 47 species
Msp_g14468	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e035782_P001	Zm00001e035782	Pentatricopeptide repeat-containing protein At1g01970...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	278	306
IPR002885	Pentatricopeptide_repeat	243	269
IPR002885	Pentatricopeptide_repeat	174	217

External Links

No external refs found!