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  5. Solyc01g090990.3.1

Solyc01g090990.3.1 (Solyc01g090990)


Aliases : Solyc01g090990

Description : contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface


Gene families : OG0000655 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g090990.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00084420 VAP27, VAP27-1,... Vesicle-associated protein 1-1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G45140 PVA12 plant VAP homolog 12 0.03 OrthoFinder output from all 47 species
Adi_g088258 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Cre03.g196900 VAP27, VAP27-1,... Vesicle-associated protein 1-1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os08g05890.1 LOC_Os08g05890 contact site protein (VAP27) of... 0.04 OrthoFinder output from all 47 species
LOC_Os08g06020.1 PVA12, LOC_Os08g06020 contact site protein (VAP27) of... 0.04 OrthoFinder output from all 47 species
Lfl_g10766 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Msp_g10884 PVA12 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021931 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Spa_g11963 VAP27, VAP27-1,... contact site protein (VAP27) of... 0.04 OrthoFinder output from all 47 species
Tin_g28738 No alias contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
InterPro domains Description Start Stop
IPR000535 MSP_dom 8 110
No external refs found!