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  5. Solyc01g090950.4.1

Solyc01g090950.4.1 (ATHAM3, HAM3, LOM3,...)


Aliases : ATHAM3, HAM3, LOM3, Solyc01g090950

Description : transcription factor (GRAS)


Gene families : OG0002830 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g090950.4.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT2G45160 ATHAM1, HAM1, LOM1 GRAS family transcription factor 0.02 OrthoFinder output from all 47 species
AT3G60630 HAM2, LOM2, ATHAM2 GRAS family transcription factor 0.08 OrthoFinder output from all 47 species
Adi_g107878 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110644 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28196 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17369 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.08G011800.1 HAM2, LOM2,... GRAS-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g19349 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03844 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os10g40390.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Len_g24209 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02436 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005674 No alias GRAS-type transcription factor & original description: CDS=1-2607 0.03 OrthoFinder output from all 47 species
Zm00001e002296_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e007302_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e015355_P002 ATHAM3, HAM3,... transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Zm00001e023181_P003 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 409 768
No external refs found!