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  5. Solyc01g090830.2.1

Solyc01g090830.2.1 (Solyc01g090830)


Aliases : Solyc01g090830

Description : C2H2 zinc finger transcription factor


Gene families : OG0000238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g090830.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00024970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
AMTR_s00106p00120810 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
AT1G02040 No alias C2H2-type zinc finger family protein 0.06 OrthoFinder output from all 47 species
AT3G10470 No alias C2H2-type zinc finger family protein 0.03 OrthoFinder output from all 47 species
AT5G04390 No alias C2H2-type zinc finger family protein 0.05 OrthoFinder output from all 47 species
Adi_g050237 No alias C2H2-type subclass ZAT transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g124388 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g31109 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene55657.t1 Aspi01Gene55657 regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Cba_g24559 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Dac_g31024 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
GSVIVT01023887001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Gb_37343 No alias C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os02g44120.1 LOC_Os02g44120 C2H2 zinc finger transcription factor 0.09 OrthoFinder output from all 47 species
LOC_Os03g60570.1 LOC_Os03g60570 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os04g46670.1 LOC_Os04g46670 C2H2 zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Lfl_g06210 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Msp_g25888 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Pir_g14471 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Pir_g18295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48566 No alias C2H2-type subclass ZAT transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pnu_g08150 No alias C2H2-type subclass ZAT transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ppi_g03954 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12963 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Solyc05g055500.1.1 Solyc05g055500 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g37939 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Zm00001e002344_P001 Zm00001e002344 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e007312_P001 Zm00001e007312 C2H2 zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
Zm00001e038054_P001 Zm00001e038054 C2H2 zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e041518_P001 Zm00001e041518 C2H2 zinc finger transcription factor 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!