Solyc01g090650.1.1 (Solyc01g090650)

Aliases : Solyc01g090650

Description : chromatin remodeling factor (Alc)

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g090650.1.1
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
AT4G31900	PKR2	chromatin remodeling factor, putative	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000144.188	CHR01, CHR1,...	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.66	No alias	Probable helicase CHR10 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
LOC_Os06g08480.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Ppi_g17918	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g18943	PKL, GYM, CHR6,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	363	483
IPR000330	SNF2_N	57	342

External Links

No external refs found!