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  5. Solyc01g088750.3.1

Solyc01g088750.3.1 (Solyc01g088750)


Aliases : Solyc01g088750

Description : Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana (sp|p0c7r4|pp110_arath : 753.0)


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088750.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
AMTR_s00110p00138300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g69290... 0.02 OrthoFinder output from all 47 species
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G17616 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g067157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116058 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G012400.1 Ceric.01G012400 not classified & original description: pacid=50592360... 0.04 OrthoFinder output from all 47 species
Ceric.01G123400.1 Ceric.01G123400 not classified & original description: pacid=50591208... 0.03 OrthoFinder output from all 47 species
Dcu_g04085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 OrthoFinder output from all 47 species
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.08 OrthoFinder output from all 47 species
LOC_Os07g31310.1 LOC_Os07g31310 Pentatricopeptide repeat-containing protein At4g17616... 0.04 OrthoFinder output from all 47 species
LOC_Os10g28665.1 LOC_Os10g28665 Pentatricopeptide repeat-containing protein At1g03100,... 0.07 OrthoFinder output from all 47 species
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.08 OrthoFinder output from all 47 species
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Ppi_g29056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.04 OrthoFinder output from all 47 species
Solyc04g008410.3.1 Solyc04g008410 Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species
Zm00001e019596_P001 Zm00001e019596 Pentatricopeptide repeat-containing protein At1g69290... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 417 461
IPR002885 Pentatricopeptide_repeat 504 545
IPR002885 Pentatricopeptide_repeat 366 388
No external refs found!