Solyc01g088560.3.1 (RAB6A, ATRABH1B,...)

Aliases : RAB6A, ATRABH1B, ATRAB6A, RAB6, Solyc01g088560

Description : H-class RAB GTPase

Gene families : OG0001773 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g088560.3.1
Cluster	HCCA: Cluster_69

Target	Alias	Description	ECC score	Gene Family Method
AT4G39890	AtRABH1c, RABH1c	RAB GTPase homolog H1C	0.04	OrthoFinder output from all 47 species
Aob_g33368	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07607	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07608	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0330.g065386	RAB6A, ATRABH1B,...	H-class RAB GTPase & original description: CDS=51-656	0.03	OrthoFinder output from all 47 species
Dde_g15877	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os03g09140.1	AtRABH1e,...	H-class RAB GTPase	0.03	OrthoFinder output from all 47 species
MA_131015g0010	AtRABH1e, RABH1e	Ras-related protein RABH1e OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Sam_g36686	No alias	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	11	169

External Links

No external refs found!