1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g088450.2.1

Solyc01g088450.2.1 (Solyc01g088450)


Aliases : Solyc01g088450

Description : no hits & (original description: none)


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088450.2.1

Target Alias Description ECC score Gene Family Method Actions
AT1G35330 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
AT1G76410 ATL8 RING/U-box superfamily protein 0.1 OrthoFinder output from all 47 species
AT2G18670 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G34000 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.04 OrthoFinder output from all 47 species
AT4G35480 RHA3B RING-H2 finger A3B 0.05 OrthoFinder output from all 47 species
Adi_g006507 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g010328 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g032305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g045665 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Adi_g048849 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g056858 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g060420 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g02496 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ala_g15539 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ala_g20426 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Als_g34929 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Als_g36432 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aob_g04978 XERICO E3 ubiquitin ligase *(BRH) & original description: none 0.25 OrthoFinder output from all 47 species
Aspi01Gene16526.t1 XERICO, Aspi01Gene16526 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20255.t1 Aspi01Gene20255 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28289.t1 Aspi01Gene28289 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36586.t1 Aspi01Gene36586 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene37667.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene51118.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene61881.t1 RHA2B, Aspi01Gene61881 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62004.t1 BRH1, Aspi01Gene62004 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010074 No alias not classified & original description: CDS=1-1416 0.02 OrthoFinder output from all 47 species
Azfi_s0030.g024239 MEE16 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.07 OrthoFinder output from all 47 species
Azfi_s0147.g052994 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g03683 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g03833 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g49099 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g77129 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.06G057500.1 Ceric.06G057500 not classified & original description: pacid=50619209... 0.03 OrthoFinder output from all 47 species
Ceric.18G057300.1 Ceric.18G057300 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.31G024600.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Dcu_g00774 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g01188 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07523 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
LOC_Os01g11460.1 ATL43, LOC_Os01g11460 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os01g11500.1 LOC_Os01g11500 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os01g60730.2 LOC_Os01g60730 RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g15120.1 ATL6, LOC_Os02g15120 RING-H2-class E3 ligase 0.06 OrthoFinder output from all 47 species
LOC_Os04g49550.1 RHA3A, LOC_Os04g49550 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os10g39450.1 RHA3B, LOC_Os10g39450 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g04609 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Len_g12736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18865 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g20892 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Lfl_g24829 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.14 OrthoFinder output from all 47 species
Lfl_g26673 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g40549 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_167410g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Nbi_g22108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05275 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18004 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g20730 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g30955 XERICO not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43979 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g13643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50189 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012209 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0158.g023798 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Solyc01g109820.1.1 Solyc01g109820 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Solyc02g038805.1.1 Solyc02g038805 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Solyc02g085270.1.1 Solyc02g085270 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Spa_g05219 ATL4H not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g24937 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g37346 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Spa_g41285 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g42431 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g23380 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.01 OrthoFinder output from all 47 species
Zm00001e010029_P001 XERICO, Zm00001e010029 ubiquitin protein ligase (XERICO) 0.03 OrthoFinder output from all 47 species
Zm00001e015470_P001 ATL8, Zm00001e015470 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 43 86
No external refs found!