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  5. Solyc01g088440.2.1

Solyc01g088440.2.1 (Solyc01g088440)


Aliases : Solyc01g088440

Description : no hits & (original description: none)


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088440.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AMTR_s00129p00065710 ATL2, TL2,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT3G60966 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G30400 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G01880 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G05280 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G06490 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.02 OrthoFinder output from all 47 species
Adi_g010229 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g048849 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g060420 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g13717 BRH1 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g14419 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Aob_g01755 ATL8 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Aop_g00454 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g03042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11862 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g14595 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g16315 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g26548 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g57707 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene37206.t1 Aspi01Gene37206 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene41078.t1 Aspi01Gene41078 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46835.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g03833 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g16136 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g26664 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g32430 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g34751 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77129 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.09G083000.1 Ceric.09G083000 not classified & original description: pacid=50588443... 0.04 OrthoFinder output from all 47 species
Ceric.15G075700.1 Ceric.15G075700 not classified & original description: pacid=50639640... 0.03 OrthoFinder output from all 47 species
Ceric.22G061200.1 Ceric.22G061200 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.22G062000.1 Ceric.22G062000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dac_g04534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10168 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dac_g11681 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dac_g45788 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g08579 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.09 OrthoFinder output from all 47 species
Dde_g00338 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g24586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03551 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g03937 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g05771 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g07523 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g29562 ATL2, TL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012019001 XERICO Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01019530001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_04301 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_08038 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Gb_08091 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_20461 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os01g53500.1 LOC_Os01g53500 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g55110.1 LOC_Os01g55110 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os02g08200.1 RHA3B, LOC_Os02g08200 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os02g36300.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g45710.1 BRH1, LOC_Os02g45710 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g37730.1 LOC_Os04g37730 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os04g49160.1 LOC_Os04g49160 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g11450.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os06g34880.1 ATL43, LOC_Os06g34880 RING-H2-class E3 ligase 0.06 OrthoFinder output from all 47 species
LOC_Os08g06090.1 RHA3B, LOC_Os08g06090 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os08g38460.1 XERICO, LOC_Os08g38460 ubiquitin protein ligase (XERICO) 0.02 OrthoFinder output from all 47 species
LOC_Os09g29310.1 ATL6, LOC_Os09g29310 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os09g30160.1 XERICO, LOC_Os09g30160 ubiquitin protein ligase (XERICO) 0.02 OrthoFinder output from all 47 species
LOC_Os09g38110.1 LOC_Os09g38110 RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g01750.1 LOC_Os12g01750 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g42540.1 LOC_Os12g42540 RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g02125 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Len_g29871 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g04652 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
MA_10436028g0010 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
MA_10436650g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_114175g0010 ATL2, TL2 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
MA_12363g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_2159g0010 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_229590g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_3929631g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_43543g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_462422g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_465316g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_61738g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_80729g0030 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_904294g0010 ATL3 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g10628 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g20330 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Msp_g35749 ATL43 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g14103 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g18327 ATL4H not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19208 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Nbi_g24015 RHA3A RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g40909 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g30588 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00937 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04383 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.07 OrthoFinder output from all 47 species
Pnu_g21782 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g05782 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g12572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g21936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g42460 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002082 ATL8 not classified & original description: CDS=1-792 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007395 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023284 No alias not classified & original description: CDS=1-567 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0158.g023798 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g20098 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Solyc05g008640.1.1 RHA2A, Solyc05g008640 RHA2 signal transducer of abscisic acid perception 0.08 OrthoFinder output from all 47 species
Solyc06g064440.3.1 Solyc06g064440 RING-H2-class E3 ligase 0.06 OrthoFinder output from all 47 species
Solyc08g076830.1.1 Solyc08g076830 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc09g066300.3.1 Solyc09g066300 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc11g005280.1.1 Solyc11g005280 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Spa_g02168 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g03047 ATL8 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g11355 No alias E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11356 XERICO E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21253 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g42431 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g02554 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g05338 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.06 OrthoFinder output from all 47 species
Tin_g12002 BRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38097 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.01 OrthoFinder output from all 47 species
Zm00001e001923_P001 ATL3, Zm00001e001923 RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e002233_P001 Zm00001e002233 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e007957_P001 ATL6, Zm00001e007957 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e010029_P001 XERICO, Zm00001e010029 ubiquitin protein ligase (XERICO) 0.02 OrthoFinder output from all 47 species
Zm00001e014302_P001 Zm00001e014302 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e015470_P001 ATL8, Zm00001e015470 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e019779_P001 Zm00001e019779 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e038107_P001 Zm00001e038107 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 50 93
No external refs found!