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  5. Solyc01g088380.3.1

Solyc01g088380.3.1 (emb2411, Solyc01g088380)


Aliases : emb2411, Solyc01g088380

Description : DNA replication auxiliary factor (JHS1/DNA2)


Gene families : OG0006070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g088380.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00216230 emb2411,... Cell cycle.interphase.DNA... 0.13 OrthoFinder output from all 47 species
AMTR_s00056p00217370 emb2411,... No description available 0.04 OrthoFinder output from all 47 species
AT1G08840 emb2411 DNA replication helicase, putative 0.03 OrthoFinder output from all 47 species
Ceric.35G004800.1 emb2411, Ceric.35G004800 DNA replication auxiliary factor *(JHS1/DNA2) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.40 No alias No description available 0.04 OrthoFinder output from all 47 species
Cre12.g528200 emb2411 Cell cycle.interphase.DNA... 0.07 OrthoFinder output from all 47 species
GSVIVT01018404001 emb2411 No description available 0.21 OrthoFinder output from all 47 species
GSVIVT01018406001 emb2411 Cell cycle.interphase.DNA... 0.21 OrthoFinder output from all 47 species
Gb_09620 emb2411 DNA replication auxiliary factor (JHS1/DNA2) 0.05 OrthoFinder output from all 47 species
LOC_Os04g49860.1 emb2411, LOC_Os04g49860 DNA replication auxiliary factor (JHS1/DNA2) 0.1 OrthoFinder output from all 47 species
MA_35265g0010 emb2411 DNA replication auxiliary factor (JHS1/DNA2) 0.03 OrthoFinder output from all 47 species
MA_43331g0010 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Mp3g16750.1 emb2411 DNA replication auxiliary factor (JHS1/DNA2) 0.03 OrthoFinder output from all 47 species
Pnu_g20162 emb2411 DNA replication auxiliary factor *(JHS1/DNA2) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13996 No alias DNA replication auxiliary factor *(JHS1/DNA2) & original... 0.04 OrthoFinder output from all 47 species
Tin_g31867 emb2411 DNA replication auxiliary factor *(JHS1/DNA2) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e007116_P001 emb2411, Zm00001e007116 DNA replication auxiliary factor (JHS1/DNA2) 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 1009 1101
IPR041677 DNA2/NAM7_AAA_11 1110 1177
IPR014808 DNA_replication_fac_Dna2_N 442 642
IPR041679 DNA2/NAM7-like_C 1186 1385
No external refs found!