Aliases : Solyc01g081320
Description : Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana (sp|q3e911|pp400_arath : 429.0)
Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc01g081320.4.1 | |
Cluster | HCCA: Cluster_8 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00002p00190720 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g02150... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00024p00251490 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g02150... | 0.03 | OrthoFinder output from all 47 species | |
AT3G15590 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g055159 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g30824 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g33654 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g09907 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene62468.t1 | Aspi01Gene62468 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.31G052700.1 | Ceric.31G052700 | RNA editing factor *(POCO) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g14866 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01018303001 | No alias | Pentatricopeptide repeat-containing protein At1g02150... | 0.03 | OrthoFinder output from all 47 species | |
Gb_09452 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
Gb_14576 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g55310.1 | LOC_Os02g55310 | Pentatricopeptide repeat-containing protein At5g27460... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g46010.1 | LOC_Os04g46010 | Pentatricopeptide repeat-containing protein At1g02150... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os10g35730.1 | LOC_Os10g35730 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g31351 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g51005 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g14511 | No alias | RNA ediTing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g37476 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e007372_P001 | Zm00001e007372 | Pentatricopeptide repeat-containing protein At1g02150... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004645 | 1,4-alpha-oligoglucan phosphorylase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
MF | GO:0008184 | glycogen phosphorylase activity | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
No external refs found! |