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  5. Solyc01g080430.4.1

Solyc01g080430.4.1 (Solyc01g080430)


Aliases : Solyc01g080430

Description : Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana (sp|q0wpj7|rf298_arath : 431.0)


Gene families : OG0001288 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001288_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc01g080430.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g057684 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09903 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G058900.1 Ceric.04G058900 E3 ubiquitin ligase *(PIR) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g17238 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013185001 No alias MND1-interacting protein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os09g20550.1 LOC_Os09g20550 MND1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g26673 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34691 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20727 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005333 No alias E3 ubiquitin ligase *(PIR) & original description: CDS=227-3001 0.03 OrthoFinder output from all 47 species
Sam_g17014 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!