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  5. Solyc01g080300.4.1

Solyc01g080300.4.1 (Solyc01g080300)


Aliases : Solyc01g080300

Description : Protein ABCI12, chloroplastic OS=Arabidopsis thaliana (sp|q944h2|ab12i_arath : 378.0)


Gene families : OG0007618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g080300.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Aop_g18980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G060600.1 Ceric.17G060600 not classified & original description: pacid=50617246... 0.03 OrthoFinder output from all 47 species
Len_g27806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426913g0010 No alias Protein ABCI12, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp2g08890.1 No alias Protein ABCI12, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g01773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026821_P001 Zm00001e026821 Protein ABCI12, chloroplastic OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR003339 ABC/ECF_trnsptr_transmembrane 105 347
No external refs found!