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  5. Solyc01g079680.3.1

Solyc01g079680.3.1 (RANGAP2, Solyc01g079680)


Aliases : RANGAP2, Solyc01g079680

Description : GTPase activating component Ran-GAP of nucleocytoplasmic transport


Gene families : OG0003182 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g079680.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G63130 RANGAP1, ATRANGAP1 RAN GTPase activating protein 1 0.05 OrthoFinder output from all 47 species
Ceric.36G048000.1 RANGAP2, Ceric.36G048000 Ran-activating protein of nucleocytoplasmic transport &... 0.03 OrthoFinder output from all 47 species
Dcu_g06325 RANGAP2 Ran-activating protein of nucleocytoplasmic transport &... 0.05 OrthoFinder output from all 47 species
GSVIVT01011081001 RANGAP2 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g02857 RANGAP2 Ran-activating protein of nucleocytoplasmic transport &... 0.02 OrthoFinder output from all 47 species
MA_83167g0010 RANGAP2 GTPase activating component Ran-GAP of nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Sam_g09537 No alias Ran-activating protein of nucleocytoplasmic transport &... 0.08 OrthoFinder output from all 47 species
Sam_g27800 No alias Ran-activating protein of nucleocytoplasmic transport &... 0.03 OrthoFinder output from all 47 species
Zm00001e015119_P001 RANGAP2, Zm00001e015119 GTPase activating component Ran-GAP of nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Zm00001e022996_P001 RANGAP2, Zm00001e022996 GTPase activating component Ran-GAP of nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025265 WPP_dom 14 109
IPR001611 Leu-rich_rpt 325 340
IPR001611 Leu-rich_rpt 383 404
IPR001611 Leu-rich_rpt 214 234
IPR001611 Leu-rich_rpt 413 432
IPR001611 Leu-rich_rpt 439 460
IPR001611 Leu-rich_rpt 354 375
No external refs found!