LOC_Os03g17510.1


Description : Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana (sp|q9zut5|pp191_arath : 536.0)


Gene families : OG_01_0011023 (Archaeplastida) Phylogenetic Tree(s): OG_01_0011023_tree ,
OG_02_0009848 (LandPlants) Phylogenetic Tree(s): OG_02_0009848_tree ,
OG_03_0012961 (SeedPlants) Phylogenetic Tree(s): OG_03_0012961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17510.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT2G37310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Archaeplastida
GSVIVT01018262001 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.09 Archaeplastida
Gb_21434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 Archaeplastida
Solyc01g090390.1.1 No alias RNA editing factor (AHG11) 0.08 Archaeplastida
Solyc09g007050.1.1 No alias Pentatricopeptide repeat-containing protein At2g37310... 0.06 Archaeplastida
AT2G37310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.09 LandPlants
GSVIVT01027196001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.05 LandPlants
Gb_21434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 LandPlants
Solyc09g007050.1.1 No alias Pentatricopeptide repeat-containing protein At2g37310... 0.04 LandPlants
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.05 LandPlants
AT2G37310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 SeedPlants
Gb_21434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 SeedPlants
Solyc09g007050.1.1 No alias Pentatricopeptide repeat-containing protein At2g37310... 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 290 319
IPR002885 Pentatricopeptide_repeat 394 414
IPR002885 Pentatricopeptide_repeat 183 210
IPR002885 Pentatricopeptide_repeat 322 349
IPR002885 Pentatricopeptide_repeat 260 287
IPR002885 Pentatricopeptide_repeat 155 181
IPR002885 Pentatricopeptide_repeat 495 518
IPR002885 Pentatricopeptide_repeat 420 467
No external refs found!