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  5. Solyc01g068280.3.1

Solyc01g068280.3.1 (CHR24, Solyc01g068280)


Aliases : CHR24, Solyc01g068280

Description : chromatin remodeling factor (ERCC6)


Gene families : OG0005354 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005354_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g068280.3.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT5G63950 CHR24 chromatin remodeling 24 0.08 OrthoFinder output from all 47 species
Aop_g13293 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0558.g076902 CHR24 chromatin remodeling factor *(ERCC6) & original... 0.06 OrthoFinder output from all 47 species
Ceric.22G065500.1 CHR24, Ceric.22G065500 chromatin remodeling factor *(ERCC6) & original... 0.03 OrthoFinder output from all 47 species
Ceric.22G065600.1 CHR24, Ceric.22G065600 not classified & original description: pacid=50613904... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000441.21 CHR24 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001292.5 CHR24 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001292.6 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre03.g183350 CHR24 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g19620 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026450001 CHR24 Chromatin organisation.chromatin remodeling... 0.1 OrthoFinder output from all 47 species
Gb_17075 CHR24 chromatin remodeling factor (ERCC6) 0.05 OrthoFinder output from all 47 species
LOC_Os04g59620.1 CHR24, LOC_Os04g59620 chromatin remodeling factor (ERCC6) 0.02 OrthoFinder output from all 47 species
LOC_Os04g59624.2 CHR24, LOC_Os04g59624 chromatin remodeling factor (ERCC6) 0.12 OrthoFinder output from all 47 species
Lfl_g19269 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.02 OrthoFinder output from all 47 species
MA_18372g0010 CHR24 Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Mp1g29760.1 CHR24 chromatin remodeling factor (ERCC6) 0.1 OrthoFinder output from all 47 species
Msp_g36236 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03168 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g24729 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007521_P001 CHR24, Zm00001e007521 chromatin remodeling factor (ERCC6) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 860 972
IPR000330 SNF2_N 520 807
No external refs found!