1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g067830.3.1

Solyc01g067830.3.1 (Solyc01g067830)


Aliases : Solyc01g067830

Description : component U1C of U1 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g067830.3.1

Target Alias Description ECC score Gene Family Method Actions
Als_g00565 No alias component *(U1C) of U1 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G042200.1 Ceric.09G042200 component *(U1C) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.55 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre09.g401300 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Mp4g05150.1 No alias component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Ppi_g15133 No alias component *(U1C) of U1 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013085 U1-CZ_Znf_C2H2 1 38
No external refs found!