Solyc01g067140.2.1 (AXR6, ATCUL1, CUL1,...)

Aliases : AXR6, ATCUL1, CUL1, Solyc01g067140

Description : scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3 ligase complexes

Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g067140.2.1
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc01g067230.4.1	AXR6, ATCUL1,...	Cullin-1 OS=Arabidopsis thaliana (sp\|q94ah6\|cul1_arath : 86.7)	0.02	OrthoFinder output from all 47 species
Solyc06g008080.2.1	AXR6, ATCUL1,...	Cullin-1 OS=Arabidopsis thaliana (sp\|q94ah6\|cul1_arath : 179.0)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0016289	CoA hydrolase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	97	307
IPR019559	Cullin_neddylation_domain	334	394

External Links

No external refs found!