LOC_Os03g17100.1


Description : histone (H2A)


Gene families : OG_01_0000174 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000174_tree ,
OG_02_0000204 (LandPlants) Phylogenetic Tree(s): OG_02_0000204_tree ,
OG_03_0000166 (SeedPlants) Phylogenetic Tree(s): OG_03_0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17100.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.05 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.12 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.03 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.12 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.06 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.04 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.11 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Gb_06384 No alias histone (H2A) 0.03 Archaeplastida
Gb_07070 No alias histone (H2A) 0.04 Archaeplastida
Gb_12570 No alias histone (H2A) 0.02 Archaeplastida
Gb_25326 No alias histone (H2A) 0.06 Archaeplastida
Gb_37579 No alias histone (H2A) 0.02 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.02 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.03 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.05 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_94328g0020 No alias histone (H2A) 0.04 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.04 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.05 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.06 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.01 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.04 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.14 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.02 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.14 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.18 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.11 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.11 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.13 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.08 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.08 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.08 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.15 Archaeplastida
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.01 LandPlants
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 LandPlants
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 LandPlants
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 LandPlants
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.05 LandPlants
AT1G51060 HTA10 histone H2A 10 0.13 LandPlants
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.03 LandPlants
AT3G20670 HTA13 histone H2A 13 0.13 LandPlants
AT4G27230 HTA2 histone H2A 2 0.06 LandPlants
AT5G27670 HTA7 histone H2A 7 0.04 LandPlants
AT5G59870 HTA6 histone H2A 6 0.11 LandPlants
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.02 LandPlants
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.08 LandPlants
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.03 LandPlants
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.03 LandPlants
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.04 LandPlants
Gb_06384 No alias histone (H2A) 0.03 LandPlants
Gb_07070 No alias histone (H2A) 0.04 LandPlants
Gb_25326 No alias histone (H2A) 0.05 LandPlants
Gb_37579 No alias histone (H2A) 0.02 LandPlants
LOC_Os12g25120.1 No alias histone (H2A) 0.03 LandPlants
MA_10425800g0010 No alias histone (H2A) 0.02 LandPlants
MA_169054g0020 No alias histone (H2A) 0.03 LandPlants
MA_213048g0010 No alias histone (H2A) 0.03 LandPlants
MA_22203g0020 No alias histone (H2A) 0.05 LandPlants
MA_427046g0010 No alias histone (H2A) 0.03 LandPlants
MA_94328g0020 No alias histone (H2A) 0.03 LandPlants
MA_962778g0010 No alias histone (H2A) 0.04 LandPlants
Mp2g00760.1 No alias histone (H2A) 0.05 LandPlants
Mp3g00840.1 No alias histone (H2A) 0.06 LandPlants
Pp3c5_1791V3.1 No alias histone H2A 10 0.01 LandPlants
Pp3c5_1800V3.1 No alias histone H2A 10 0.01 LandPlants
Pp3c6_29410V3.1 No alias histone H2A 10 0.04 LandPlants
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.04 LandPlants
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.02 LandPlants
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 LandPlants
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 LandPlants
Solyc01g099410.3.1 No alias histone (H2A) 0.12 LandPlants
Solyc03g005220.4.1 No alias histone (H2A) 0.02 LandPlants
Solyc09g010400.3.1 No alias histone (H2A) 0.13 LandPlants
Solyc09g074300.1.1 No alias histone (H2A) 0.06 LandPlants
Solyc09g082710.3.1 No alias histone (H2A) 0.03 LandPlants
Solyc10g006560.4.1 No alias histone (H2A) 0.04 LandPlants
Solyc11g073250.2.1 No alias histone (H2A) 0.17 LandPlants
Solyc11g073260.2.1 No alias histone (H2A) 0.01 LandPlants
Solyc12g005270.2.1 No alias histone (H2A) 0.05 LandPlants
Zm00001e010515_P001 No alias histone (H2A) 0.07 LandPlants
Zm00001e011643_P001 No alias histone (H2A) 0.1 LandPlants
Zm00001e012144_P001 No alias histone (H2A) 0.03 LandPlants
Zm00001e020483_P001 No alias histone (H2A) 0.11 LandPlants
Zm00001e033014_P001 No alias histone (H2A) 0.12 LandPlants
Zm00001e035183_P002 No alias histone (H2A) 0.07 LandPlants
Zm00001e039735_P001 No alias histone (H2A) 0.14 LandPlants
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.01 SeedPlants
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 SeedPlants
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 SeedPlants
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 SeedPlants
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.05 SeedPlants
AT1G51060 HTA10 histone H2A 10 0.11 SeedPlants
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.03 SeedPlants
AT3G20670 HTA13 histone H2A 13 0.13 SeedPlants
AT4G27230 HTA2 histone H2A 2 0.06 SeedPlants
AT5G27670 HTA7 histone H2A 7 0.03 SeedPlants
AT5G59870 HTA6 histone H2A 6 0.1 SeedPlants
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.08 SeedPlants
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.03 SeedPlants
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.02 SeedPlants
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.04 SeedPlants
Gb_07070 No alias histone (H2A) 0.04 SeedPlants
Gb_25326 No alias histone (H2A) 0.05 SeedPlants
Gb_34906 No alias histone (H2A) 0.01 SeedPlants
Gb_37579 No alias histone (H2A) 0.01 SeedPlants
LOC_Os12g25120.1 No alias histone (H2A) 0.03 SeedPlants
MA_10425800g0010 No alias histone (H2A) 0.02 SeedPlants
MA_169054g0020 No alias histone (H2A) 0.03 SeedPlants
MA_213048g0010 No alias histone (H2A) 0.03 SeedPlants
MA_22203g0020 No alias histone (H2A) 0.05 SeedPlants
MA_427046g0010 No alias histone (H2A) 0.04 SeedPlants
MA_7320190g0010 No alias histone (H2A) 0.01 SeedPlants
MA_74667g0010 No alias histone (H2A) 0.01 SeedPlants
MA_94328g0020 No alias histone (H2A) 0.02 SeedPlants
MA_962778g0010 No alias histone (H2A) 0.04 SeedPlants
Solyc01g099410.3.1 No alias histone (H2A) 0.12 SeedPlants
Solyc03g005220.4.1 No alias histone (H2A) 0.02 SeedPlants
Solyc09g010400.3.1 No alias histone (H2A) 0.13 SeedPlants
Solyc09g074300.1.1 No alias histone (H2A) 0.06 SeedPlants
Solyc09g082710.3.1 No alias histone (H2A) 0.03 SeedPlants
Solyc10g006560.4.1 No alias histone (H2A) 0.03 SeedPlants
Solyc11g073250.2.1 No alias histone (H2A) 0.16 SeedPlants
Solyc11g073260.2.1 No alias histone (H2A) 0.01 SeedPlants
Solyc12g005270.2.1 No alias histone (H2A) 0.04 SeedPlants
Zm00001e010515_P001 No alias histone (H2A) 0.07 SeedPlants
Zm00001e011643_P001 No alias histone (H2A) 0.1 SeedPlants
Zm00001e012144_P001 No alias histone (H2A) 0.03 SeedPlants
Zm00001e020483_P001 No alias histone (H2A) 0.1 SeedPlants
Zm00001e033014_P001 No alias histone (H2A) 0.12 SeedPlants
Zm00001e035183_P002 No alias histone (H2A) 0.07 SeedPlants
Zm00001e039735_P001 No alias histone (H2A) 0.13 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 105 138
IPR007125 Histone_H2A/H2B/H3 20 102
No external refs found!