Solyc01g058190.4.1 (RFC3, Solyc01g058190)

Aliases : RFC3, Solyc01g058190

Description : no hits & (original description: none)

Gene families : OG0007901 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007901_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g058190.4.1
Cluster	HCCA: Cluster_153

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00065640	RFC3,...	No description available	0.05	OrthoFinder output from all 47 species
AT3G17170	RFC3	Translation elongation factor EF1B/ribosomal protein S6...	0.15	OrthoFinder output from all 47 species
Als_g04233	RFC3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09513	RFC3	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ceric.35G040500.1	RFC3, Ceric.35G040500	not classified & original description: pacid=50580923...	0.06	OrthoFinder output from all 47 species
Ehy_g11675	RFC3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01034952001	RFC3	No description available	0.06	OrthoFinder output from all 47 species
LOC_Os12g37610.1	RFC3, LOC_Os12g37610	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Lfl_g17154	RFC3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_9569g0010	RFC3	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Nbi_g09569	RFC3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g14530	RFC3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g46522	RFC3	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Smo7735	RFC3	No description available	0.04	OrthoFinder output from all 47 species
Spa_g04186	RFC3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e018204_P001	RFC3, Zm00001e018204	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	128	216

External Links

No external refs found!

Solyc01g058190.4.1 (RFC3, Solyc01g058190)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation