Solyc01g057760.4.1 (Solyc01g057760)

Aliases : Solyc01g057760

Description : DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana (sp|q9sqv1|rh40_arath : 729.0)

Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g057760.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00005p00263980	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
AMTR_s00096p00079870	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
AT3G06480	No alias	DEAD box RNA helicase family protein	0.06	OrthoFinder output from all 47 species
Adi_g020036	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g024667	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.02	OrthoFinder output from all 47 species
Adi_g036389	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g074120	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g14759	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g18220	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g22206	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g33054	ATDRH1, DRH1	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g09685	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.02	OrthoFinder output from all 47 species
Cba_g10365	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g68173	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.06G044900.1	ATDRH1, DRH1,...	not classified & original description: pacid=50619771...	0.02	OrthoFinder output from all 47 species
Ceric.27G030300.1	ATDRH1, DRH1,...	not classified & original description: pacid=50605657...	0.09	OrthoFinder output from all 47 species
Dac_g12670	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.02	OrthoFinder output from all 47 species
Dcu_g10539	ATDRH1, DRH1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g10540	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g41933	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.02	OrthoFinder output from all 47 species
Ehy_g16807	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g20062	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_10302	ATDRH1, DRH1	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os01g36860.1	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
LOC_Os11g46240.1	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Len_g17375	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g51090	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.05	OrthoFinder output from all 47 species
Lfl_g05034	ATDRH1, DRH1	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Lfl_g13618	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.05	OrthoFinder output from all 47 species
Lfl_g39840	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10432707g0010	ATDRH1, DRH1	DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_19015g0010	No alias	pre-mRNA splicing regulator (DDX5)	0.04	OrthoFinder output from all 47 species
Mp3g07940.1	No alias	pre-mRNA splicing regulator (DDX5)	0.02	OrthoFinder output from all 47 species
Ore_g02786	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g08678	ATDRH1, DRH1	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ore_g19068	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.07	OrthoFinder output from all 47 species
Pir_g15938	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g12189	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14840	ATDRH1, DRH1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g57963	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Sam_g29066	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g086660.4.1	ATDRH1, DRH1,...	ATP-dependent RNA helicase-like protein DB10...	0.01	OrthoFinder output from all 47 species
Zm00001e011376_P001	Zm00001e011376	ATP-dependent RNA helicase-like protein DB10...	0.08	OrthoFinder output from all 47 species
Zm00001e016546_P001	Zm00001e016546	pre-mRNA splicing regulator (DDX5)	0.04	OrthoFinder output from all 47 species
Zm00001e018885_P005	Zm00001e018885	pre-mRNA splicing regulator (DDX5)	0.03	OrthoFinder output from all 47 species
Zm00001e020727_P006	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
Zm00001e020972_P005	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e027719_P003	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	805	913
IPR011545	DEAD/DEAH_box_helicase_dom	598	768

External Links

No external refs found!

Solyc01g057760.4.1 (Solyc01g057760)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation