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Aliases : RPOC2, Solyc01g056840
Description : no hits & (original description: none)
Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc01g056840.1.1 | |
| Cluster | HCCA: Cluster_1 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00028p00130230 | RPOC2,... | DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00390p00012910 | RPOC2,... | Protein biosynthesis.organelle translation... | 0.03 | OrthoFinder output from all 47 species | |
| ATCG00170 | RPOC2 | DNA-directed RNA polymerase family protein | 0.08 | OrthoFinder output from all 47 species | |
| Aev_g15088 | RPOC2 | core component *(RpoC2) of plastid-encoded RNA... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.06G046000.1 | RPOC2, Ceric.06G046000 | not classified & original description: pacid=50620845... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.29G004900.1 | RPOC2, Ceric.29G004900 | core component *(RpoC2) of plastid-encoded RNA... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.32G060700.1 | RPOC2, Ceric.32G060700 | not classified & original description: pacid=50597350... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.38G010200.1 | RPOC2, Ceric.38G010200 | not classified & original description: pacid=50579905... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01017094001 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Vitis vinifera | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01019173001 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Vitis vinifera | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01032753001 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Vitis vinifera | 0.03 | OrthoFinder output from all 47 species | |
| Gb_02726 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_09031 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_09032 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Pinus... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_09773 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_10415 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Pinus... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_26285 | RPOC2 | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g16830.1 | RPOC2, LOC_Os04g16830 | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.05 | OrthoFinder output from all 47 species | |
| Mp1g00060.1 | RPOC2 | RpoC2 core component plastid-encoded RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c7_4990V3.1 | RPOC2, Pp3c7_4990 | DNA-directed RNA polymerase family protein | 0.01 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0533.g027467 | RPOC2 | not classified & original description: CDS=1-840 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0533.g027468 | RPOC2 | not classified & original description: CDS=1-702 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g007260.1.1 | RPOC2, Solyc11g007260 | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g062650.1.1 | RPOC2, Solyc12g062650 | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e042169_P001 | RPOC2, Zm00001e042169 | RpoC2 core component plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | HCCA |
| MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | HCCA |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | HCCA |
| MF | GO:0015453 | oxidoreduction-driven active transmembrane transporter activity | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
| BP | GO:0017004 | cytochrome complex assembly | IEP | HCCA |
| MF | GO:0020037 | heme binding | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| MF | GO:0046906 | tetrapyrrole binding | IEP | HCCA |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |