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  5. Solyc01g056575.1.1

Solyc01g056575.1.1 (Solyc01g056575)


Aliases : Solyc01g056575

Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 153.0)


Gene families : OG0000001 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g056575.1.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
ATMG00860 ORF158 DNA/RNA polymerases superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g062208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g083678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g40176 ORF158 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene04556.t1 Aspi01Gene04556 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05953.t1 Aspi01Gene05953 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06550.t1 Aspi01Gene06550 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20360.t1 Aspi01Gene20360 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29620.t1 Aspi01Gene29620 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38037.t1 Aspi01Gene38037 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38644.t1 Aspi01Gene38644 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene40409.t1 Aspi01Gene40409 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene49828.t1 Aspi01Gene49828 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g45941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36635 ORF158 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g12094 ORF158 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g01344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g041685.1.1 Solyc08g041685 RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 OrthoFinder output from all 47 species
Solyc09g150114.1.1 Solyc09g150114 RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 OrthoFinder output from all 47 species
Solyc11g020827.1.1 Solyc11g020827 RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 OrthoFinder output from all 47 species
Solyc11g028217.1.1 Solyc11g028217 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc12g040285.1.1 Solyc12g040285 RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 OrthoFinder output from all 47 species
Solyc12g062826.1.1 ORF158, Solyc12g062826 Uncharacterized mitochondrial protein AtMg00860... 0.02 OrthoFinder output from all 47 species
Tin_g29148 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0030896 checkpoint clamp complex IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR000477 RT_dom 2 111
No external refs found!