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  5. Solyc01g020440.3.1

Solyc01g020440.3.1 (EMB251, RFC3, EMB161,...)


Aliases : EMB251, RFC3, EMB161, EMB2775, Solyc01g020440

Description : component RFC3 of PCNA sliding clamp loader complex


Gene families : OG0003475 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003475_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g020440.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00097520 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.04 OrthoFinder output from all 47 species
Azfi_s1584.g104475 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
Ceric.21G050200.1 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000704.48 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
Cre16.g679950 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.1 OrthoFinder output from all 47 species
Gb_39448 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g57870.1 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.03 OrthoFinder output from all 47 species
MA_10426511g0010 EMB251, RFC3,... Replication factor C subunit 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_168293g0010 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.08 OrthoFinder output from all 47 species
Zm00001e005947_P001 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!