Solyc01g017085.1.1 (RPS18, Solyc01g017085)

Aliases : RPS18, Solyc01g017085

Description : component psRPS18 of small ribosomal subunit proteome

Gene families : OG0003437 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003437_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g017085.1.1

Target	Alias	Description	ECC score	Gene Family Method
ATCG00650	RPS18	ribosomal protein S18	0.13	OrthoFinder output from all 47 species
Ceric.01G105500.1	RPS18, Ceric.01G105500	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.05G041200.1	RPS18, Ceric.05G041200	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.28G030100.1	RPS18, Ceric.28G030100	component *(bS18c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.38G007700.1	RPS18, Ceric.38G007700	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
LOC_Os08g15308.1	RPS18, LOC_Os08g15308	component psRPS18 of small ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
LOC_Os10g21312.1	RPS18, LOC_Os10g21312	component psRPS18 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Zm00001e042027_P001	RPS18, Zm00001e042027	component psRPS18 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Zm00001e042146_P001	RPS18, Zm00001e042146	component psRPS18 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001648	Ribosomal_S18	13	61

External Links

No external refs found!

Solyc01g017085.1.1 (RPS18, Solyc01g017085)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation