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  5. Solyc01g008600.4.1

Solyc01g008600.4.1 (Solyc01g008600)


Aliases : Solyc01g008600

Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc01g008600.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.03 OrthoFinder output from all 47 species
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 OrthoFinder output from all 47 species
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.07 OrthoFinder output from all 47 species
Ceric.13G095300.1 Ceric.13G095300 not classified & original description: pacid=50635361... 0.02 OrthoFinder output from all 47 species
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.06 OrthoFinder output from all 47 species
LOC_Os03g21140.1 LOC_Os03g21140 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os03g21160.2 LOC_Os03g21160 C3H zinc finger transcription factor 0.1 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Lfl_g23635 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001546_P001 Zm00001e001546 C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e038256_P001 Zm00001e038256 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 326 373
IPR000571 Znf_CCCH 195 216
No external refs found!