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  5. Solyc01g008480.4.1

Solyc01g008480.4.1 (Solyc01g008480)


Aliases : Solyc01g008480

Description : Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana (sp|q9zu29|pp139_arath : 538.0)


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g008480.4.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00187020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g01390... 0.05 OrthoFinder output from all 47 species
Dde_g07946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.05 OrthoFinder output from all 47 species
Mp5g07730.1 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010895 No alias not classified & original description: CDS=1-2118 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
CC GO:0042579 microbody IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 266 308
IPR002885 Pentatricopeptide_repeat 500 546
IPR002885 Pentatricopeptide_repeat 207 256
IPR002885 Pentatricopeptide_repeat 138 184
No external refs found!