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  5. Solyc01g006500.4.1

Solyc01g006500.4.1 (Solyc01g006500)


Aliases : Solyc01g006500

Description : Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana (sp|q9fkc3|pp424_arath : 652.0)


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g006500.4.1

Target Alias Description ECC score Gene Family Method Actions
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g05989 EMB2453, ATPPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01190 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017677001 EMB2750 Pentatricopeptide repeat-containing protein At3g06430,... 0.06 OrthoFinder output from all 47 species
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
Gb_36199 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.06 OrthoFinder output from all 47 species
LOC_Os02g51480.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.04 OrthoFinder output from all 47 species
LOC_Os03g19650.3 EMB2750, LOC_Os03g19650 Pentatricopeptide repeat-containing protein At3g06430,... 0.06 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Msp_g27398 EMB2453, ATPPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11535 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075 No alias not classified & original description: CDS=33-1412 0.03 OrthoFinder output from all 47 species
Sam_g51172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00939 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.07 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 350 396
IPR002885 Pentatricopeptide_repeat 173 219
IPR002885 Pentatricopeptide_repeat 243 290
IPR002885 Pentatricopeptide_repeat 419 465
IPR002885 Pentatricopeptide_repeat 144 169
IPR002885 Pentatricopeptide_repeat 317 344
No external refs found!