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  5. Solyc01g006380.2.1

Solyc01g006380.2.1 (Solyc01g006380)


Aliases : Solyc01g006380

Description : Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula (sp|d1fp53|lin_medtr : 90.9)


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g006380.2.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 OrthoFinder output from all 47 species
GSVIVT01015355001 No alias External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
LOC_Os02g07190.1 LOC_Os02g07190 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species
MA_126120g0010 No alias Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.07 OrthoFinder output from all 47 species
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species
Ore_g24437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016398_P001 Zm00001e016398 ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA

No InterPro domains available for this sequence

No external refs found!