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Aliases : Solyc01g006170
Description : pre-60S ribosomal subunit assembly factor (EBP2)
Gene families : OG0004650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004650_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc01g006170.4.1 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00176430 | evm_27.TU.AmTr_v1... | Probable rRNA-processing protein EBP2 homolog... | 0.05 | OrthoFinder output from all 47 species | |
| AT3G22660 | No alias | rRNA processing protein-related | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g00627 | No alias | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g04107 | No alias | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09403 | No alias | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0705.g082696 | No alias | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.28G019100.1 | Ceric.28G019100 | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.07 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000880.12 | No alias | Probable rRNA-processing protein EBP2 homolog... | 0.08 | OrthoFinder output from all 47 species | |
| Cre07.g351750 | No alias | Probable rRNA-processing protein EBP2 homolog... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g09923 | No alias | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018514001 | No alias | Probable rRNA-processing protein EBP2 homolog... | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os07g29320.1 | LOC_Os07g29320 | pre-60S ribosomal subunit assembly factor (EBP2) | 0.08 | OrthoFinder output from all 47 species | |
| MA_138177g0010 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.14 | OrthoFinder output from all 47 species | |
| Mp3g18310.1 | No alias | pre-60S ribosomal subunit assembly factor (EBP2) | 0.16 | OrthoFinder output from all 47 species | |
| Pp3c6_25210V3.1 | Pp3c6_25210 | rRNA processing protein-related | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13265 | No alias | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g25020 | No alias | pre-60S ribosomal subunit assembly factor *(EBP2) &... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e010357_P001 | Zm00001e010357 | pre-60S ribosomal subunit assembly factor (EBP2) | 0.14 | OrthoFinder output from all 47 species | |
| Zm00001e013941_P001 | Zm00001e013941 | pre-60S ribosomal subunit assembly factor (EBP2) | 0.12 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| CC | GO:0034457 | Mpp10 complex | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR008610 | Ebp2 | 22 | 293 |
| No external refs found! |